grateful - Facilitate Citation of R Packages
Facilitates the citation of R packages used in analysis projects. Scans project for packages used, gets their citations, and produces a document with citations in the preferred bibliography format, ready to be pasted into reports or manuscripts. Alternatively, 'grateful' can be used directly within an 'R Markdown' or 'Quarto' document.
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citation-generatorsoftware-citation
8.31 score 242 stars 808 scripts 810 downloads
MicrobiomeR - Analyze Microbiome Data
An R package for microbiome analysis combining functions from phyloseq, metacodeR, and microbiome into an easy to use and full featured microbiome analysis package.
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metagenomicsmicrobiomesequencingsystemsbiologyalpha-diversitybeta-diversitybioinformaticscolor-palettecomprehensivemetacodermicrobial-genomicsmicrobiologymicrobiome-analysispcoapermanovaphyloseqvisualization
5.90 score 24 stars 94 scriptsBioThingsClient.R - BioThings Client (https://github.com/biothings/BioThingsClient.R)
This is a unified R client for all "BioThings APIs" (more at http://biothings.io). BioThings APIs are a collection of high-performance APIs for variety of aggregated entity-type specific annotations, such as genes, variants, chemicals, drugs etc. (so called "BioThings"). It also provides a SDK (BioThings SDK) for users to build their own BioThings API for any biological entity types. This client provides a generic R library for existing BioThings APIs as well as the new BioThings APIs will be created in the future, either by us or users.
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variantannotationannotationgenomicvariationapiapi-clientbiothingsbiothings-apis
3.78 score 6 stars 3 scriptsdocumenteR - RStudio Addin to Standardize Writing Documentation
An RStudio addin that builds the skeleton of documentation for an R function or dataframe using the roxygen2 syntax.
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documentdocumentationroxygenroxygen-skeletonsroxygen2
3.75 score 2 stars 14 scriptsJournalAnalysis - Explore and Identify Journals to Publish in
A package for exploring and identifying the best journals in which to publish a paper.
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journal-analysisjstorscimago
3.30 score 2 stars 7 scriptsharlem - Color Palettes Inspired by Harlem Renaissance Artists
The 'harlem' package offers a collection of color palettes inspired by iconic works from Harlem Renaissance artists. These palettes can be easily integrated into data visualizations in R.
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color-palettecolor-schemeharlemharlem-renaissancer-palettestheme
3.18 score 1 stars 5 scriptspkgmkr - Create an R Package with One Simple Function
Simplifies the process of creating R packages by providing a single, straightforward function that handles package initialization, Git integration, license selection, README generation, and pkgdown site setup. Package creation can also be configured using YAML or JSON configuration files.
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r-package-development
2.18 score 1 stars