{ "_id": "6a2a38597b7a29ca600371ad", "Package": "BioThingsClient.R", "Type": "Package", "Title": "BioThings Client\n(https://github.com/biothings/BioThingsClient.R)", "Description": "This is a unified R client for all \"BioThings APIs\" (more\nat http://biothings.io). BioThings APIs are a collection of\nhigh-performance APIs for variety of aggregated entity-type\nspecific annotations, such as genes, variants, chemicals, drugs\netc. (so called \"BioThings\"). It also provides a SDK (BioThings\nSDK) for users to build their own BioThings API for any\nbiological entity types. This client provides a generic R\nlibrary for existing BioThings APIs as well as the new\nBioThings APIs will be created in the future, either by us or\nusers.", "Version": "0.99.1", "Author": "Thomas Johnson ", "Maintainer": "Thomas Johnson ", "Authors@R": "c(person(\"Thomas\", \"Johnson\",\nemail = \"thomascjohnson@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Chunlei\", \"Wu\",\nemail = \"cwu@scripps.edu\", role = c(\"aut\")))", "License": "Apache License 2.0", "Roxygen": "list(wrap = FALSE)", "Collate": "'utils.R' 'BioThingsClient.R' 'biothings_clients.R' 'get.R'\n'metadata.R' 'query.R'", "RoxygenNote": "6.0.1", "VignetteBuilder": "knitr", "biocViews": "VariantAnnotation, Annotation, GenomicVariation", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev", "Repository": "https://sdhutchins.r-universe.dev", "Date/Publication": "2020-01-08 19:57:12 UTC", "RemoteUrl": "https://github.com/biothings/BioThingsClient.R", "RemoteRef": "HEAD", "RemoteSha": "ba76366febc7f19a546db01654e33d9199279cb6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-11 04:18:47 UTC", "User": "root" }, "MD5sum": "f200b73a5ba367f734a30e08f0b20889", "_user": "sdhutchins", "_type": "src", "_file": "BioThingsClient.R_0.99.1.tar.gz", "_fileid": "9800ac93462c1c89fd2620a4fc22aaf02820e2c16374217a9d38b8420ba7ebe2", "_filesize": 117556, "_sha256": "9800ac93462c1c89fd2620a4fc22aaf02820e2c16374217a9d38b8420ba7ebe2", "_created": "2026-06-11T04:18:47.000Z", "_published": "2026-06-11T04:23:53.765Z", "_distro": "noble", "_jobs": [ { "job": 80719705891, "time": 197, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7554728059" }, { "job": 80719705901, "time": 166, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7554722272" }, { "job": 80719705882, "time": 89, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7554707355" }, { "job": 80719705884, "time": 145, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7554718225" }, { "job": 80719248771, "time": 268, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7554689612" }, { "job": 80719705878, "time": 123, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7554713949" }, { "job": 80719705889, "time": 112, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7554712245" }, { "job": 80719705879, "time": 100, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7554709365" }, { "job": 80719705892, "time": 95, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7554708259" } ], "_buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/biothings/BioThingsClient.R", "_commit": { "id": "ba76366febc7f19a546db01654e33d9199279cb6", "author": "Chunlei Wu ", "committer": "GitHub ", "message": "Merge pull request #3 from sdhutchins/patch-4\n\nUpdate README.md", "time": 1578513432 }, "_maintainer": { "name": "Thomas Johnson", "email": "thomascjohnson@gmail.com", "login": "thomascjohnson", "description": "", "uuid": 1365754 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4", "role": "Depends" }, { "package": "jsonlite", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "Hmisc", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "biothings", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "variantannotation", "annotation", "genomicvariation", "api", "api-client", "biothings", "biothings-apis" ], "_stars": 6, "_contributors": [ { "user": "thomascjohnson", "count": 55, "uuid": 1365754 }, { "user": "newgene", "count": 5, "uuid": 130158 }, { "user": "sdhutchins", "count": 1, "uuid": 20976111 } ], "_userbio": { "uuid": 20976111, "type": "user", "name": "Shaurita D. Hutchins", "description": "PhD Candidate at UAB.\r\nGenetics, Genomics, & Bioinformatics.\r\n\r\nCurrent lab: @uab-cgds-worthey. \r\n\r\nFormer lab: @vallenderlab.\r\n\r\n" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BioThingsClient.R" }, "_devurl": "https://github.com/biothings/biothingsclient.r", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/BioThingsClient.R.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "biothings_clients", "BioThingsClient", "btFields", "btGet", "btMetadata", "btQuery" ], "_help": [ { "page": "biothings_clients", "title": "BioThings API Client Configuration", "topics": [ "biothings_clients" ] }, { "page": "BioThingsClient-class", "title": "BioThingsClient", "topics": [ "BioThingsClient", "BioThingsClient-class" ] }, { "page": "btFields-methods", "title": "btFields", "topics": [ "btFields", "btFields,BioThings,BioThings-method", "btFields,BioThingsClient-method", "btFields,character-method" ] }, { "page": "btGet-methods", "title": "Get items from BioThings APIs", "topics": [ "btGet", "btGet,BioThingsClient-method", "btGet,character-method", "btGet,missing-method" ] }, { "page": "btMetadata-methods", "title": "btMetadata", "topics": [ "btMetadata", "btMetadata,BioThings,BioThings-method", "btMetadata,BioThingsClient-method", "btMetadata,character-method" ] }, { "page": "btQuery-methods", "title": "btQuery", "topics": [ "btQuery", "btQuery,BioThingsClient-method", "btQuery,character-method", "btQuery,missing-method" ] } ], "_readme": "https://github.com/biothings/BioThingsClient.R/raw/HEAD/README.md", "_rundeps": [ "askpass", "backports", "base64enc", "bslib", "cachem", "checkmate", "cli", "cluster", "colorspace", "cpp11", "curl", "data.table", "digest", "evaluate", "farver", "fastmap", "fontawesome", "foreign", "Formula", "fs", "ggplot2", "glue", "gridExtra", "gtable", "highr", "Hmisc", "htmlTable", "htmltools", "htmlwidgets", "httr", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lifecycle", "magrittr", "memoise", "mime", "nnet", "openssl", "R6", "rappdirs", "RColorBrewer", "rlang", "rmarkdown", "rpart", "rstudioapi", "S7", "sass", "scales", "stringi", "stringr", "sys", "tinytex", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_vignettes": [ { "source": "biothings.Rmd", "filename": "biothings.html", "title": "BioThingsClient Package", "author": "Thomas Johnson", "engine": "knitr::rmarkdown", "headings": [ "Package Usage", "Annotations", "Example: btGet", "Queries", "Example: btQuery", "Example: Using fetch_all parameter", "Metadata and Metadata Fields" ], "created": "2017-10-18 18:48:19", "modified": "2017-11-08 13:20:01", "commits": 4 } ], "_score": 3.778151250383644, "_indexed": false, "_nocasepkg": "biothingsclient.r", "_universes": [ "sdhutchins" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.99.1", "date": "2026-06-11T04:23:07.000Z", "distro": "noble", "commit": "ba76366febc7f19a546db01654e33d9199279cb6", "fileid": "ee28999529adfd85321db76adf785864dd29ba787c38f583a0543549f19fe93c", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745" }, { "r": "4.6.0", "os": "linux", "version": "0.99.1", "date": "2026-06-11T04:22:36.000Z", "distro": "noble", "commit": "ba76366febc7f19a546db01654e33d9199279cb6", "fileid": "d5e257c982fe104b9e5b4abfe2a62bd0c046b988a33f93fc9c976ba7be551832", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745" }, { "r": "4.5.3", "os": "mac", "version": "0.99.1", "date": "2026-06-11T04:21:28.000Z", "commit": "ba76366febc7f19a546db01654e33d9199279cb6", "fileid": "0955ad668424aa5fa6e3aaffa6fb1fb4d5665a8423ade6ba10dd958c3b6fc991", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745" }, { "r": "4.6.0", "os": "mac", "version": "0.99.1", "date": "2026-06-11T04:22:11.000Z", "commit": "ba76366febc7f19a546db01654e33d9199279cb6", "fileid": "1d052840e22694d3dd4fc1c3d04c354879b0801ff53ba7bc6041829019a82da1", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745" }, { "r": "4.6.0", "os": "wasm", "version": "0.99.1", "date": "2026-06-11T04:22:23.000Z", "commit": "ba76366febc7f19a546db01654e33d9199279cb6", "fileid": "0e23f2f61bd1386bdd44d76c70e57f788a3946d6f5a91106834ae27c77df06ea", "status": "success", "buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745" }, { "r": "4.7.0", "os": "win", "version": "0.99.1", "date": "2026-06-11T04:21:39.000Z", "commit": "ba76366febc7f19a546db01654e33d9199279cb6", "fileid": "297a3824468dca99c2edb9074ab7ddf96cacd9183e2a12213ebf9e08dae1217f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745" }, { "r": "4.5.3", "os": "win", "version": "0.99.1", "date": "2026-06-11T04:21:23.000Z", "commit": "ba76366febc7f19a546db01654e33d9199279cb6", "fileid": "242b9f73e9be3dcd06efcd0c183b5d3b86e0cbb92d2079f15dc15d27727c0b95", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745" }, { "r": "4.6.0", "os": "win", "version": "0.99.1", "date": "2026-06-11T04:21:18.000Z", "commit": "ba76366febc7f19a546db01654e33d9199279cb6", "fileid": "1e32959f6f791ab46570c695f998a93b91f52c6dcc9b2253b2c004aa0f3e0fdf", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/sdhutchins/actions/runs/27323404745" } ] }