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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MicrobiomeR" in publications use:'
type: software
license: MIT
title: 'MicrobiomeR: Analyze Microbiome Data'
version: 0.8.0
doi: 10.21105/joss.01299
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MicrobiomeR
abstract: An R package for microbiome analysis combining functions from phyloseq,
  metacodeR, and microbiome into an easy to use and full featured microbiome analysis
  package.
authors:
- family-names: Gilmore
  given-names: Robert
  email: rgilmore@umc.edu
- family-names: Hutchins
  given-names: Shaurita
  email: shaurita.hutchins@gmail.com
preferred-citation:
  type: article
  title: 'MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis
    Workflows'
  authors:
  - family-names: Gilmore
    given-names: Robert A.
  - family-names: Hutchins
    given-names: Shaurita
    email: shaurita.hutchins@gmail.com
  - family-names: Zhang
    given-names: Xiao
  - family-names: Vallender
    given-names: Eric
  journal: Journal of Open Source Software
  year: '2019'
  volume: '4'
  issue: '35'
  doi: 10.21105/joss.01299
  url: https://doi.org/10.21105/joss.01299
  start: '1299'
repository: https://sdhutchins.r-universe.dev
repository-code: https://github.com/vallenderlab/MicrobiomeR
commit: 951564731f0e93334d43fc55a54a49b0da9c66c6
url: https://vallenderlab.github.io/MicrobiomeR/
date-released: '2026-09-05'
contact:
- family-names: Gilmore
  given-names: Robert
  email: rgilmore@umc.edu