Package: MicrobiomeR Title: Analyze Microbiome Data Version: 0.8.0 Authors@R: c( person("Robert", "Gilmore", email = "rgilmore@umc.edu", role = c("aut", "cre")), person("Shaurita", "Hutchins", email = "shaurita.hutchins@gmail.com", role = "aut")) Maintainer: Shaurita Hutchins License: MIT + file LICENSE biocViews: Metagenomics, Microbiome, Sequencing, SystemsBiology Description: An R package for microbiome analysis combining functions from phyloseq, metacodeR, and microbiome into an easy to use and full featured microbiome analysis package. Roxygen: list(markdown = TRUE) Depends: R (>= 4.1.0) Remotes: ropensci/taxa, grunwaldlab/metacoder, joey711/phyloseq, microbiome/microbiome, jonclayden/shades Imports: ape, biomformat, cli, crayon, DT, data.table, diptest, dplyr (>= 0.8.0), forcats, ggplot2, ggpubr, ggthemes, ggrepel, glue, htmlwidgets, htmltools, leaflet, lifecycle, magrittr, metacoder, microbiome (>= 1.5.27), openxlsx, phyloseq, plotly, purrr, rlang, rstudioapi, scales, scico, shades, SparseArray, stringr, taxa, tibble, tidyr, vegan, vctrs, viridis, yaml Suggests: covr, knitr, rmarkdown, testthat Encoding: UTF-8 RoxygenNote: 7.3.3 LazyData: true LazyDataCompression: xz URL: https://github.com/vallenderlab/MicrobiomeR, https://vallenderlab.github.io/MicrobiomeR/ BugReports: https://github.com/vallenderlab/MicrobiomeR/issues VignetteBuilder: knitr StagedInstall: false Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev libglpk-dev make libicu-dev libjpeg-dev libpng-dev libuv1-dev libxml2-dev libssl-dev libproj-dev libsqlite3-dev libudunits2-dev libx11-dev zlib1g-dev Repository: https://sdhutchins.r-universe.dev Date/Publication: 2026-09-05 21:37:14 UTC RemoteUrl: https://github.com/vallenderlab/MicrobiomeR RemoteRef: HEAD RemoteSha: 951564731f0e93334d43fc55a54a49b0da9c66c6 NeedsCompilation: no Packaged: 2026-10-05 13:02:27 UTC; root Author: Robert Gilmore [aut, cre], Shaurita Hutchins [aut]